PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G064100.3
Common NameB456_008G064100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 181aa    MW: 19751.6 Da    PI: 7.9058
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G064100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46e-08433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+ +++ fC  ++  lC+ C ++ H
  Gorai.008G064100.3  4 LCDACESAPAIVFCAADEAALCRACDEKVH 33
                        6**************************998 PP

2zf-B_box27.94.8e-095292238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H 
  Gorai.008G064100.3 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtHG 92
                        6799***************************9966556675 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352147IPR000315B-box-type zinc finger
CDDcd000212.26E-6345No hitNo description
PfamPF006432.5E-6442IPR000315B-box-type zinc finger
SMARTSM003361.8E-7447IPR000315B-box-type zinc finger
SMARTSM003363.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.8595196IPR000315B-box-type zinc finger
PfamPF006434.9E-75291IPR000315B-box-type zinc finger
CDDcd000219.07E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MRILCDACES APAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRNLLLRQR VEFPGDKPAH IDETRRGQNH  120
PRKTPVGEKQ QNHKVSPVHG ADAAAAAVGH LETDTKMIDL NMKPHRIHGQ ASNNQVRTTL  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436832.11e-128PREDICTED: B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM51e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2PPV41e-132A0A0D2PPV4_G
STRINGVIT_04s0023g03030.t018e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-78DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]